kmeans Update 0.2
- Added documentation - Added new array for data savings Co-Authored-By: tchemn <tchemn@users.noreply.github.com>
This commit is contained in:
@@ -3,7 +3,7 @@
|
|||||||
#description: Our personal Python K-Means++ implementation
|
#description: Our personal Python K-Means++ implementation
|
||||||
#author: Tillmann Brendel, Conrad Großer
|
#author: Tillmann Brendel, Conrad Großer
|
||||||
#date: 26.05.2018
|
#date: 26.05.2018
|
||||||
#version: 0.1
|
#version: 0.2
|
||||||
#usage: python pyscript.py
|
#usage: python pyscript.py
|
||||||
#notes:
|
#notes:
|
||||||
#known_issues:
|
#known_issues:
|
||||||
@@ -25,29 +25,50 @@ import multiprocessing
|
|||||||
# CODE
|
# CODE
|
||||||
# Main function of the algorithm
|
# Main function of the algorithm
|
||||||
def kmeansmk1(data):
|
def kmeansmk1(data):
|
||||||
|
# Using two clusters for testing
|
||||||
clusters = 2
|
clusters = 2
|
||||||
data_size = len(data)
|
|
||||||
|
# Create a new data array for working
|
||||||
|
new_data = []
|
||||||
|
new_data.append(data)
|
||||||
|
|
||||||
|
# Get the size of the data array
|
||||||
|
data_size = len(new_data[0])
|
||||||
|
|
||||||
# Defining cluster points
|
# Defining cluster points
|
||||||
for i in range(0, clusters):
|
for i in range(0, clusters):
|
||||||
globals()["cpoint_" + str(i)] = randint(0, data_size)
|
globals()["cpoint_" + str(i)] = randint(0, data_size)
|
||||||
print("Cluster " + str(i) + ": " + str(data[globals()["cpoint_" + str(i)]]))
|
print("Cluster " + str(i) + ": " + str(new_data[0][globals()["cpoint_" + str(i)]]))
|
||||||
|
|
||||||
|
# Create new array for assigned clusters of each value
|
||||||
data_assigned = []
|
data_assigned = []
|
||||||
highPoint = findHighest(data)
|
|
||||||
|
|
||||||
|
# Get max value in the data array
|
||||||
|
highPoint = findHighest(new_data[0])
|
||||||
|
|
||||||
|
# For each item in data find the minimal difference to a cluster and write it in the new data array in the second place (new_data[item][cluster_index])
|
||||||
for item in range(0, data_size):
|
for item in range(0, data_size):
|
||||||
|
# Set the minimal cluster difference to the highest difference in the list to ease comparision
|
||||||
min_cluster = highPoint
|
min_cluster = highPoint
|
||||||
|
|
||||||
|
# Check the difference between the point (item) and each cluster and set min_cluster to the smallest difference
|
||||||
for cluster in range(0, clusters):
|
for cluster in range(0, clusters):
|
||||||
clusternumber = globals()["cpoint_" + str(cluster)]
|
clusternumber = globals()["cpoint_" + str(cluster)]
|
||||||
if min_cluster > calcdiff(item, clusternumber, data):
|
if min_cluster > calcdiff(item, clusternumber, new_data[0]):
|
||||||
min_cluster = calcdiff(item, clusternumber, data)
|
min_cluster = calcdiff(item, clusternumber, new_data[0])
|
||||||
assinged_cluster = clusternumber
|
assinged_cluster = clusternumber
|
||||||
|
# Assign the minimal difference cluster to the data
|
||||||
data_assigned.append(assinged_cluster)
|
data_assigned.append(assinged_cluster)
|
||||||
|
# Add the assigned values list to the new_data array
|
||||||
|
new_data.append(data_assigned)
|
||||||
|
|
||||||
# for item in range(0, data_size):
|
# Print out the list of datapoints and assigned clusters
|
||||||
# print("Datapoint: " + str(data[item]) + " | Assigned cluster: " + str(data[data_assigned[item]]))
|
for item in range(0, len(new_data[0])):
|
||||||
|
print("Datapoint: " + str(new_data[0][item]) + " | Assigned cluster: " + str(new_data[0][new_data[1][item]]))
|
||||||
|
|
||||||
|
return new_data
|
||||||
|
|
||||||
|
# Determine the highest int value in an array
|
||||||
def findHighest(data):
|
def findHighest(data):
|
||||||
maximum = 0
|
maximum = 0
|
||||||
for i in range(0, len(data)):
|
for i in range(0, len(data)):
|
||||||
@@ -55,6 +76,7 @@ def findHighest(data):
|
|||||||
maximum = int(data[i])
|
maximum = int(data[i])
|
||||||
return maximum
|
return maximum
|
||||||
|
|
||||||
|
# Calculate the difference between two points giving the indexes of these data entries
|
||||||
def calcdiff(point1, point2, data):
|
def calcdiff(point1, point2, data):
|
||||||
if int(data[point2]) > int(data[point1]):
|
if int(data[point2]) > int(data[point1]):
|
||||||
difference = int(data[point2]) - int(data[point1])
|
difference = int(data[point2]) - int(data[point1])
|
||||||
@@ -63,10 +85,11 @@ def calcdiff(point1, point2, data):
|
|||||||
# print("Datapoint: " + str(data[point1]) + " | Cluster: " + str(data[point2]) + " | Difference: " + str(difference))
|
# print("Datapoint: " + str(data[point1]) + " | Cluster: " + str(data[point2]) + " | Difference: " + str(difference))
|
||||||
return betrag(difference)
|
return betrag(difference)
|
||||||
|
|
||||||
def betrag(zahl):
|
# Get the absolute value of a number
|
||||||
if zahl < 0:
|
def betrag(number):
|
||||||
zahl = int((-2 * zahl) / 2)
|
if number < 0:
|
||||||
return zahl
|
number = int((-2 * number) / 2)
|
||||||
|
return number
|
||||||
|
|
||||||
# Startup function for collecting necesarry data
|
# Startup function for collecting necesarry data
|
||||||
def startup(data):
|
def startup(data):
|
||||||
@@ -79,7 +102,7 @@ def startup(data):
|
|||||||
|
|
||||||
# Firing up the engines!
|
# Firing up the engines!
|
||||||
kmeansmk1(data)
|
kmeansmk1(data)
|
||||||
# kmeansmk1(clusters, cores, path)
|
# kmeansmk1(clusters, cores, data)
|
||||||
|
|
||||||
# Stopping benchmark
|
# Stopping benchmark
|
||||||
seconds = time.time() - start_time
|
seconds = time.time() - start_time
|
||||||
@@ -111,5 +134,6 @@ def generatePLZ(start):
|
|||||||
plz = plz + str(randint(0,9))
|
plz = plz + str(randint(0,9))
|
||||||
return plz
|
return plz
|
||||||
|
|
||||||
|
# Start the algorithm and generate test data
|
||||||
data = testgenerator()
|
data = testgenerator()
|
||||||
startup(data)
|
startup(data)
|
||||||
Reference in New Issue
Block a user