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dev_kmeans
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6
.gitignore
vendored
6
.gitignore
vendored
@@ -1,2 +1,8 @@
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testdata/
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testdata/
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__pycache__/
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__pycache__/
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||||||
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.idea/workspace.xml
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||||||
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.idea/vcs.xml
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||||||
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.idea/modules.xml
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.idea/misc.xml
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.idea/miner.iml
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.idea/libraries/R_User_Library.xml
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3
CODE_OF_CONDUCT.md
Normal file
3
CODE_OF_CONDUCT.md
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@@ -0,0 +1,3 @@
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|||||||
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# Code of Conduct
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||||||
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||||||
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Be excellent to each other.
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||||||
13
CONTRIBUTING.md
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13
CONTRIBUTING.md
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|||||||
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# Contribution Guide
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||||||
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||||||
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1. Write your algorithm (and test it!)
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2. Choose a neat name for it (NAME in the following)
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||||||
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3. Fork this repository
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||||||
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4. Create subfolder src/algorithms/NAME with your algorithm and a readme.md-file
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||||||
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5. Add your algorithm to the menu-script in the algorithm-folder
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||||||
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6. Add your algorithm to the list above in the following format NAME | Author
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||||||
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7. Create a pull request to merge the data (if your algorithm works)
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||||||
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||||||
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Thanks for your contribution!
|
||||||
|
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||||||
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**Pay attention: Please don't commit test data. NEVER commit passwords or personal information!**
|
||||||
695
LICENSE
695
LICENSE
@@ -1,674 +1,21 @@
|
|||||||
GNU GENERAL PUBLIC LICENSE
|
MIT License
|
||||||
Version 3, 29 June 2007
|
|
||||||
|
Copyright (c) 2020 GB - Informatik
|
||||||
Copyright (C) 2007 Free Software Foundation, Inc. <http://fsf.org/>
|
|
||||||
Everyone is permitted to copy and distribute verbatim copies
|
Permission is hereby granted, free of charge, to any person obtaining a copy
|
||||||
of this license document, but changing it is not allowed.
|
of this software and associated documentation files (the "Software"), to deal
|
||||||
|
in the Software without restriction, including without limitation the rights
|
||||||
Preamble
|
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
|
||||||
|
copies of the Software, and to permit persons to whom the Software is
|
||||||
The GNU General Public License is a free, copyleft license for
|
furnished to do so, subject to the following conditions:
|
||||||
software and other kinds of works.
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|
||||||
|
The above copyright notice and this permission notice shall be included in all
|
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The licenses for most software and other practical works are designed
|
copies or substantial portions of the Software.
|
||||||
to take away your freedom to share and change the works. By contrast,
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|
||||||
the GNU General Public License is intended to guarantee your freedom to
|
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
|
||||||
share and change all versions of a program--to make sure it remains free
|
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
|
||||||
software for all its users. We, the Free Software Foundation, use the
|
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
|
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GNU General Public License for most of our software; it applies also to
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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any other work released this way by its authors. You can apply it to
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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your programs, too.
|
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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When we speak of free software, we are referring to freedom, not
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want it, that you can change the software or use pieces of it in new
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free programs, and that you know you can do these things.
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To protect your rights, we need to prevent others from denying you
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certain responsibilities if you distribute copies of the software, or if
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you modify it: responsibilities to respect the freedom of others.
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For example, if you distribute copies of such a program, whether
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or can get the source code. And you must show them these terms so they
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Developers that use the GNU GPL protect your rights with two steps:
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Some devices are designed to deny users access to install or run
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stand ready to extend this provision to those domains in future versions
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Finally, every program is threatened constantly by software patents.
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States should not allow patents to restrict development and use of
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The precise terms and conditions for copying, distribution and
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|
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modification follow.
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|
||||||
TERMS AND CONDITIONS
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|
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|
||||||
0. Definitions.
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|
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"This License" refers to version 3 of the GNU General Public License.
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"Copyright" also means copyright-like laws that apply to other kinds of
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"The Program" refers to any copyrightable work licensed under this
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License. Each licensee is addressed as "you". "Licensees" and
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To "modify" a work means to copy from or adapt all or part of the work
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A "covered work" means either the unmodified Program or a work based
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To "propagate" a work means to do anything with it that, without
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To "convey" a work means any kind of propagation that enables other
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The "source code" for a work means the preferred form of the work
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The Corresponding Source need not include anything that users
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|
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The Corresponding Source for a work in source code form is that
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same work.
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|
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All rights granted under this License are granted for the term of
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content, constitutes a covered work. This License acknowledges your
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You may make, run and propagate covered works that you do not
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convey, without conditions so long as your license otherwise remains
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in force. You may convey covered works to others for the sole purpose
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with facilities for running those works, provided that you comply with
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the terms of this License in conveying all material for which you do
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not control copyright. Those thus making or running the covered works
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for you must do so exclusively on your behalf, under your direction
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and control, on terms that prohibit them from making any copies of
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your copyrighted material outside their relationship with you.
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Conveying under any other circumstances is permitted solely under
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the conditions stated below. Sublicensing is not allowed; section 10
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makes it unnecessary.
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3. Protecting Users' Legal Rights From Anti-Circumvention Law.
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No covered work shall be deemed part of an effective technological
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similar laws prohibiting or restricting circumvention of such
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When you convey a covered work, you waive any legal power to forbid
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keep intact all notices stating that this License and any
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non-permissive terms added in accord with section 7 apply to the code;
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You may charge any price or no price for each copy that you convey,
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|
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|
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a) The work must carry prominent notices stating that you modified
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|
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it, and giving a relevant date.
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|
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|
||||||
b) The work must carry prominent notices stating that it is
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|
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released under this License and any conditions added under section
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||||||
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|
||||||
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|
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License to anyone who comes into possession of a copy. This
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License will therefore apply, along with any applicable section 7
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|
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permission to license the work in any other way, but it does not
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|
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|
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in or on a volume of a storage or distribution medium, is called an
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"aggregate" if the compilation and its resulting copyright are not
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used to limit the access or legal rights of the compilation's users
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|
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|
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You may convey a covered work in object code form under the terms
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|
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customarily used for software interchange.
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written offer, valid for at least three years and valid for as
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long as you offer spare parts or customer support for that product
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copy of the Corresponding Source for all the software in the
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|
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|
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copy the object code is a network server, the Corresponding Source
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|
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|
||||||
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|
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Source of the work are being offered to the general public at no
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charge under subsection 6d.
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|
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|
||||||
A separable portion of the object code, whose source code is excluded
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|
||||||
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|
||||||
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|
||||||
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|
||||||
A "User Product" is either (1) a "consumer product", which means any
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|
||||||
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|
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|
||||||
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||||||
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|
||||||
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|
||||||
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|
||||||
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|
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|
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|
||||||
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|
|
||||||
|
|
||||||
"Installation Information" for a User Product means any methods,
|
|
||||||
procedures, authorization keys, or other information required to install
|
|
||||||
and execute modified versions of a covered work in that User Product from
|
|
||||||
a modified version of its Corresponding Source. The information must
|
|
||||||
suffice to ensure that the continued functioning of the modified object
|
|
||||||
code is in no case prevented or interfered with solely because
|
|
||||||
modification has been made.
|
|
||||||
|
|
||||||
If you convey an object code work under this section in, or with, or
|
|
||||||
specifically for use in, a User Product, and the conveying occurs as
|
|
||||||
part of a transaction in which the right of possession and use of the
|
|
||||||
User Product is transferred to the recipient in perpetuity or for a
|
|
||||||
fixed term (regardless of how the transaction is characterized), the
|
|
||||||
Corresponding Source conveyed under this section must be accompanied
|
|
||||||
by the Installation Information. But this requirement does not apply
|
|
||||||
if neither you nor any third party retains the ability to install
|
|
||||||
modified object code on the User Product (for example, the work has
|
|
||||||
been installed in ROM).
|
|
||||||
|
|
||||||
The requirement to provide Installation Information does not include a
|
|
||||||
requirement to continue to provide support service, warranty, or updates
|
|
||||||
for a work that has been modified or installed by the recipient, or for
|
|
||||||
the User Product in which it has been modified or installed. Access to a
|
|
||||||
network may be denied when the modification itself materially and
|
|
||||||
adversely affects the operation of the network or violates the rules and
|
|
||||||
protocols for communication across the network.
|
|
||||||
|
|
||||||
Corresponding Source conveyed, and Installation Information provided,
|
|
||||||
in accord with this section must be in a format that is publicly
|
|
||||||
documented (and with an implementation available to the public in
|
|
||||||
source code form), and must require no special password or key for
|
|
||||||
unpacking, reading or copying.
|
|
||||||
|
|
||||||
7. Additional Terms.
|
|
||||||
|
|
||||||
"Additional permissions" are terms that supplement the terms of this
|
|
||||||
License by making exceptions from one or more of its conditions.
|
|
||||||
Additional permissions that are applicable to the entire Program shall
|
|
||||||
be treated as though they were included in this License, to the extent
|
|
||||||
that they are valid under applicable law. If additional permissions
|
|
||||||
apply only to part of the Program, that part may be used separately
|
|
||||||
under those permissions, but the entire Program remains governed by
|
|
||||||
this License without regard to the additional permissions.
|
|
||||||
|
|
||||||
When you convey a copy of a covered work, you may at your option
|
|
||||||
remove any additional permissions from that copy, or from any part of
|
|
||||||
it. (Additional permissions may be written to require their own
|
|
||||||
removal in certain cases when you modify the work.) You may place
|
|
||||||
additional permissions on material, added by you to a covered work,
|
|
||||||
for which you have or can give appropriate copyright permission.
|
|
||||||
|
|
||||||
Notwithstanding any other provision of this License, for material you
|
|
||||||
add to a covered work, you may (if authorized by the copyright holders of
|
|
||||||
that material) supplement the terms of this License with terms:
|
|
||||||
|
|
||||||
a) Disclaiming warranty or limiting liability differently from the
|
|
||||||
terms of sections 15 and 16 of this License; or
|
|
||||||
|
|
||||||
b) Requiring preservation of specified reasonable legal notices or
|
|
||||||
author attributions in that material or in the Appropriate Legal
|
|
||||||
Notices displayed by works containing it; or
|
|
||||||
|
|
||||||
c) Prohibiting misrepresentation of the origin of that material, or
|
|
||||||
requiring that modified versions of such material be marked in
|
|
||||||
reasonable ways as different from the original version; or
|
|
||||||
|
|
||||||
d) Limiting the use for publicity purposes of names of licensors or
|
|
||||||
authors of the material; or
|
|
||||||
|
|
||||||
e) Declining to grant rights under trademark law for use of some
|
|
||||||
trade names, trademarks, or service marks; or
|
|
||||||
|
|
||||||
f) Requiring indemnification of licensors and authors of that
|
|
||||||
material by anyone who conveys the material (or modified versions of
|
|
||||||
it) with contractual assumptions of liability to the recipient, for
|
|
||||||
any liability that these contractual assumptions directly impose on
|
|
||||||
those licensors and authors.
|
|
||||||
|
|
||||||
All other non-permissive additional terms are considered "further
|
|
||||||
restrictions" within the meaning of section 10. If the Program as you
|
|
||||||
received it, or any part of it, contains a notice stating that it is
|
|
||||||
governed by this License along with a term that is a further
|
|
||||||
restriction, you may remove that term. If a license document contains
|
|
||||||
a further restriction but permits relicensing or conveying under this
|
|
||||||
License, you may add to a covered work material governed by the terms
|
|
||||||
of that license document, provided that the further restriction does
|
|
||||||
not survive such relicensing or conveying.
|
|
||||||
|
|
||||||
If you add terms to a covered work in accord with this section, you
|
|
||||||
must place, in the relevant source files, a statement of the
|
|
||||||
additional terms that apply to those files, or a notice indicating
|
|
||||||
where to find the applicable terms.
|
|
||||||
|
|
||||||
Additional terms, permissive or non-permissive, may be stated in the
|
|
||||||
form of a separately written license, or stated as exceptions;
|
|
||||||
the above requirements apply either way.
|
|
||||||
|
|
||||||
8. Termination.
|
|
||||||
|
|
||||||
You may not propagate or modify a covered work except as expressly
|
|
||||||
provided under this License. Any attempt otherwise to propagate or
|
|
||||||
modify it is void, and will automatically terminate your rights under
|
|
||||||
this License (including any patent licenses granted under the third
|
|
||||||
paragraph of section 11).
|
|
||||||
|
|
||||||
However, if you cease all violation of this License, then your
|
|
||||||
license from a particular copyright holder is reinstated (a)
|
|
||||||
provisionally, unless and until the copyright holder explicitly and
|
|
||||||
finally terminates your license, and (b) permanently, if the copyright
|
|
||||||
holder fails to notify you of the violation by some reasonable means
|
|
||||||
prior to 60 days after the cessation.
|
|
||||||
|
|
||||||
Moreover, your license from a particular copyright holder is
|
|
||||||
reinstated permanently if the copyright holder notifies you of the
|
|
||||||
violation by some reasonable means, this is the first time you have
|
|
||||||
received notice of violation of this License (for any work) from that
|
|
||||||
copyright holder, and you cure the violation prior to 30 days after
|
|
||||||
your receipt of the notice.
|
|
||||||
|
|
||||||
Termination of your rights under this section does not terminate the
|
|
||||||
licenses of parties who have received copies or rights from you under
|
|
||||||
this License. If your rights have been terminated and not permanently
|
|
||||||
reinstated, you do not qualify to receive new licenses for the same
|
|
||||||
material under section 10.
|
|
||||||
|
|
||||||
9. Acceptance Not Required for Having Copies.
|
|
||||||
|
|
||||||
You are not required to accept this License in order to receive or
|
|
||||||
run a copy of the Program. Ancillary propagation of a covered work
|
|
||||||
occurring solely as a consequence of using peer-to-peer transmission
|
|
||||||
to receive a copy likewise does not require acceptance. However,
|
|
||||||
nothing other than this License grants you permission to propagate or
|
|
||||||
modify any covered work. These actions infringe copyright if you do
|
|
||||||
not accept this License. Therefore, by modifying or propagating a
|
|
||||||
covered work, you indicate your acceptance of this License to do so.
|
|
||||||
|
|
||||||
10. Automatic Licensing of Downstream Recipients.
|
|
||||||
|
|
||||||
Each time you convey a covered work, the recipient automatically
|
|
||||||
receives a license from the original licensors, to run, modify and
|
|
||||||
propagate that work, subject to this License. You are not responsible
|
|
||||||
for enforcing compliance by third parties with this License.
|
|
||||||
|
|
||||||
An "entity transaction" is a transaction transferring control of an
|
|
||||||
organization, or substantially all assets of one, or subdividing an
|
|
||||||
organization, or merging organizations. If propagation of a covered
|
|
||||||
work results from an entity transaction, each party to that
|
|
||||||
transaction who receives a copy of the work also receives whatever
|
|
||||||
licenses to the work the party's predecessor in interest had or could
|
|
||||||
give under the previous paragraph, plus a right to possession of the
|
|
||||||
Corresponding Source of the work from the predecessor in interest, if
|
|
||||||
the predecessor has it or can get it with reasonable efforts.
|
|
||||||
|
|
||||||
You may not impose any further restrictions on the exercise of the
|
|
||||||
rights granted or affirmed under this License. For example, you may
|
|
||||||
not impose a license fee, royalty, or other charge for exercise of
|
|
||||||
rights granted under this License, and you may not initiate litigation
|
|
||||||
(including a cross-claim or counterclaim in a lawsuit) alleging that
|
|
||||||
any patent claim is infringed by making, using, selling, offering for
|
|
||||||
sale, or importing the Program or any portion of it.
|
|
||||||
|
|
||||||
11. Patents.
|
|
||||||
|
|
||||||
A "contributor" is a copyright holder who authorizes use under this
|
|
||||||
License of the Program or a work on which the Program is based. The
|
|
||||||
work thus licensed is called the contributor's "contributor version".
|
|
||||||
|
|
||||||
A contributor's "essential patent claims" are all patent claims
|
|
||||||
owned or controlled by the contributor, whether already acquired or
|
|
||||||
hereafter acquired, that would be infringed by some manner, permitted
|
|
||||||
by this License, of making, using, or selling its contributor version,
|
|
||||||
but do not include claims that would be infringed only as a
|
|
||||||
consequence of further modification of the contributor version. For
|
|
||||||
purposes of this definition, "control" includes the right to grant
|
|
||||||
patent sublicenses in a manner consistent with the requirements of
|
|
||||||
this License.
|
|
||||||
|
|
||||||
Each contributor grants you a non-exclusive, worldwide, royalty-free
|
|
||||||
patent license under the contributor's essential patent claims, to
|
|
||||||
make, use, sell, offer for sale, import and otherwise run, modify and
|
|
||||||
propagate the contents of its contributor version.
|
|
||||||
|
|
||||||
In the following three paragraphs, a "patent license" is any express
|
|
||||||
agreement or commitment, however denominated, not to enforce a patent
|
|
||||||
(such as an express permission to practice a patent or covenant not to
|
|
||||||
sue for patent infringement). To "grant" such a patent license to a
|
|
||||||
party means to make such an agreement or commitment not to enforce a
|
|
||||||
patent against the party.
|
|
||||||
|
|
||||||
If you convey a covered work, knowingly relying on a patent license,
|
|
||||||
and the Corresponding Source of the work is not available for anyone
|
|
||||||
to copy, free of charge and under the terms of this License, through a
|
|
||||||
publicly available network server or other readily accessible means,
|
|
||||||
then you must either (1) cause the Corresponding Source to be so
|
|
||||||
available, or (2) arrange to deprive yourself of the benefit of the
|
|
||||||
patent license for this particular work, or (3) arrange, in a manner
|
|
||||||
consistent with the requirements of this License, to extend the patent
|
|
||||||
license to downstream recipients. "Knowingly relying" means you have
|
|
||||||
actual knowledge that, but for the patent license, your conveying the
|
|
||||||
covered work in a country, or your recipient's use of the covered work
|
|
||||||
in a country, would infringe one or more identifiable patents in that
|
|
||||||
country that you have reason to believe are valid.
|
|
||||||
|
|
||||||
If, pursuant to or in connection with a single transaction or
|
|
||||||
arrangement, you convey, or propagate by procuring conveyance of, a
|
|
||||||
covered work, and grant a patent license to some of the parties
|
|
||||||
receiving the covered work authorizing them to use, propagate, modify
|
|
||||||
or convey a specific copy of the covered work, then the patent license
|
|
||||||
you grant is automatically extended to all recipients of the covered
|
|
||||||
work and works based on it.
|
|
||||||
|
|
||||||
A patent license is "discriminatory" if it does not include within
|
|
||||||
the scope of its coverage, prohibits the exercise of, or is
|
|
||||||
conditioned on the non-exercise of one or more of the rights that are
|
|
||||||
specifically granted under this License. You may not convey a covered
|
|
||||||
work if you are a party to an arrangement with a third party that is
|
|
||||||
in the business of distributing software, under which you make payment
|
|
||||||
to the third party based on the extent of your activity of conveying
|
|
||||||
the work, and under which the third party grants, to any of the
|
|
||||||
parties who would receive the covered work from you, a discriminatory
|
|
||||||
patent license (a) in connection with copies of the covered work
|
|
||||||
conveyed by you (or copies made from those copies), or (b) primarily
|
|
||||||
for and in connection with specific products or compilations that
|
|
||||||
contain the covered work, unless you entered into that arrangement,
|
|
||||||
or that patent license was granted, prior to 28 March 2007.
|
|
||||||
|
|
||||||
Nothing in this License shall be construed as excluding or limiting
|
|
||||||
any implied license or other defenses to infringement that may
|
|
||||||
otherwise be available to you under applicable patent law.
|
|
||||||
|
|
||||||
12. No Surrender of Others' Freedom.
|
|
||||||
|
|
||||||
If conditions are imposed on you (whether by court order, agreement or
|
|
||||||
otherwise) that contradict the conditions of this License, they do not
|
|
||||||
excuse you from the conditions of this License. If you cannot convey a
|
|
||||||
covered work so as to satisfy simultaneously your obligations under this
|
|
||||||
License and any other pertinent obligations, then as a consequence you may
|
|
||||||
not convey it at all. For example, if you agree to terms that obligate you
|
|
||||||
to collect a royalty for further conveying from those to whom you convey
|
|
||||||
the Program, the only way you could satisfy both those terms and this
|
|
||||||
License would be to refrain entirely from conveying the Program.
|
|
||||||
|
|
||||||
13. Use with the GNU Affero General Public License.
|
|
||||||
|
|
||||||
Notwithstanding any other provision of this License, you have
|
|
||||||
permission to link or combine any covered work with a work licensed
|
|
||||||
under version 3 of the GNU Affero General Public License into a single
|
|
||||||
combined work, and to convey the resulting work. The terms of this
|
|
||||||
License will continue to apply to the part which is the covered work,
|
|
||||||
but the special requirements of the GNU Affero General Public License,
|
|
||||||
section 13, concerning interaction through a network will apply to the
|
|
||||||
combination as such.
|
|
||||||
|
|
||||||
14. Revised Versions of this License.
|
|
||||||
|
|
||||||
The Free Software Foundation may publish revised and/or new versions of
|
|
||||||
the GNU General Public License from time to time. Such new versions will
|
|
||||||
be similar in spirit to the present version, but may differ in detail to
|
|
||||||
address new problems or concerns.
|
|
||||||
|
|
||||||
Each version is given a distinguishing version number. If the
|
|
||||||
Program specifies that a certain numbered version of the GNU General
|
|
||||||
Public License "or any later version" applies to it, you have the
|
|
||||||
option of following the terms and conditions either of that numbered
|
|
||||||
version or of any later version published by the Free Software
|
|
||||||
Foundation. If the Program does not specify a version number of the
|
|
||||||
GNU General Public License, you may choose any version ever published
|
|
||||||
by the Free Software Foundation.
|
|
||||||
|
|
||||||
If the Program specifies that a proxy can decide which future
|
|
||||||
versions of the GNU General Public License can be used, that proxy's
|
|
||||||
public statement of acceptance of a version permanently authorizes you
|
|
||||||
to choose that version for the Program.
|
|
||||||
|
|
||||||
Later license versions may give you additional or different
|
|
||||||
permissions. However, no additional obligations are imposed on any
|
|
||||||
author or copyright holder as a result of your choosing to follow a
|
|
||||||
later version.
|
|
||||||
|
|
||||||
15. Disclaimer of Warranty.
|
|
||||||
|
|
||||||
THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
|
|
||||||
APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
|
|
||||||
HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
|
|
||||||
OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
|
|
||||||
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
|
|
||||||
PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
|
|
||||||
IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
|
|
||||||
ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
|
|
||||||
|
|
||||||
16. Limitation of Liability.
|
|
||||||
|
|
||||||
IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
|
|
||||||
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
|
|
||||||
THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
|
|
||||||
GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
|
|
||||||
USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
|
|
||||||
DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
|
|
||||||
PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
|
|
||||||
EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
|
|
||||||
SUCH DAMAGES.
|
|
||||||
|
|
||||||
17. Interpretation of Sections 15 and 16.
|
|
||||||
|
|
||||||
If the disclaimer of warranty and limitation of liability provided
|
|
||||||
above cannot be given local legal effect according to their terms,
|
|
||||||
reviewing courts shall apply local law that most closely approximates
|
|
||||||
an absolute waiver of all civil liability in connection with the
|
|
||||||
Program, unless a warranty or assumption of liability accompanies a
|
|
||||||
copy of the Program in return for a fee.
|
|
||||||
|
|
||||||
END OF TERMS AND CONDITIONS
|
|
||||||
|
|
||||||
How to Apply These Terms to Your New Programs
|
|
||||||
|
|
||||||
If you develop a new program, and you want it to be of the greatest
|
|
||||||
possible use to the public, the best way to achieve this is to make it
|
|
||||||
free software which everyone can redistribute and change under these terms.
|
|
||||||
|
|
||||||
To do so, attach the following notices to the program. It is safest
|
|
||||||
to attach them to the start of each source file to most effectively
|
|
||||||
state the exclusion of warranty; and each file should have at least
|
|
||||||
the "copyright" line and a pointer to where the full notice is found.
|
|
||||||
|
|
||||||
<one line to give the program's name and a brief idea of what it does.>
|
|
||||||
Copyright (C) <year> <name of author>
|
|
||||||
|
|
||||||
This program is free software: you can redistribute it and/or modify
|
|
||||||
it under the terms of the GNU General Public License as published by
|
|
||||||
the Free Software Foundation, either version 3 of the License, or
|
|
||||||
(at your option) any later version.
|
|
||||||
|
|
||||||
This program is distributed in the hope that it will be useful,
|
|
||||||
but WITHOUT ANY WARRANTY; without even the implied warranty of
|
|
||||||
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
|
|
||||||
GNU General Public License for more details.
|
|
||||||
|
|
||||||
You should have received a copy of the GNU General Public License
|
|
||||||
along with this program. If not, see <http://www.gnu.org/licenses/>.
|
|
||||||
|
|
||||||
Also add information on how to contact you by electronic and paper mail.
|
|
||||||
|
|
||||||
If the program does terminal interaction, make it output a short
|
|
||||||
notice like this when it starts in an interactive mode:
|
|
||||||
|
|
||||||
<program> Copyright (C) <year> <name of author>
|
|
||||||
This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
|
|
||||||
This is free software, and you are welcome to redistribute it
|
|
||||||
under certain conditions; type `show c' for details.
|
|
||||||
|
|
||||||
The hypothetical commands `show w' and `show c' should show the appropriate
|
|
||||||
parts of the General Public License. Of course, your program's commands
|
|
||||||
might be different; for a GUI interface, you would use an "about box".
|
|
||||||
|
|
||||||
You should also get your employer (if you work as a programmer) or school,
|
|
||||||
if any, to sign a "copyright disclaimer" for the program, if necessary.
|
|
||||||
For more information on this, and how to apply and follow the GNU GPL, see
|
|
||||||
<http://www.gnu.org/licenses/>.
|
|
||||||
|
|
||||||
The GNU General Public License does not permit incorporating your program
|
|
||||||
into proprietary programs. If your program is a subroutine library, you
|
|
||||||
may consider it more useful to permit linking proprietary applications with
|
|
||||||
the library. If this is what you want to do, use the GNU Lesser General
|
|
||||||
Public License instead of this License. But first, please read
|
|
||||||
<http://www.gnu.org/philosophy/why-not-lgpl.html>.
|
|
||||||
|
|||||||
28
README.md
28
README.md
@@ -1,17 +1,17 @@
|
|||||||
# Collection Of Data Mining Algorithms (CODMA)
|
|
||||||
|
|
||||||
[](https://www.gnu.org/licenses/agpl-3.0)
|
[](https://www.gnu.org/licenses/agpl-3.0)
|
||||||
|
# Collection Of Data Mining Algorithm
|
||||||
|
|
||||||
## What is this?
|
## What is this?
|
||||||
|
|
||||||
This is the collection of our algorithm and its modules for data analyses
|
This is a collection of some algorithms and modules we use for data analyses
|
||||||
|
|
||||||
## List of Algorithms
|
## List of Algorithms
|
||||||
|
|
||||||
| Name of Algorithm | Author |
|
| Name of Algorithm | Name of File| Author |
|
||||||
| ------------- | ------------- |
|
| ------------- | ------------- | ------------- |
|
||||||
| kmeansMkI.py | [Tillmann](https://github.com/tchemn) and [Conrad](https://github.com/creyd) |
|
| k-Means | kmeansMkI.py | [Tillmann](https://github.com/tchemn) and [Conrad](https://github.com/creyd) |
|
||||||
| [ PENDING ] | [ PENDING ] |
|
| k-Means (2D) | kmeansMkI_2d.py | [Tillmann](https://github.com/tchemn) and [Conrad](https://github.com/creyd) |
|
||||||
|
| [ Your Algorithm ] | [ Your File Name] | [ Your Name ] |
|
||||||
|
|
||||||
## List of Modules
|
## List of Modules
|
||||||
|
|
||||||
@@ -22,18 +22,6 @@ This is the collection of our algorithm and its modules for data analyses
|
|||||||
|
|
||||||
## How to contribute
|
## How to contribute
|
||||||
|
|
||||||
1. Write your algorithm (or part of it)
|
Take a look at [CONTRIBUTING.md](https://github.com/gb-i/data_mining_algorithms/blob/master/CONTRIBUTING.md) for guidelines.
|
||||||
2. Choose a neat name for it (NAME in the following)
|
|
||||||
3. Fork this repository (or with rights: add a branch `alg_NAME`)
|
|
||||||
4. Create subfolder `src/algorithms/NAME`
|
|
||||||
5. Add your algorithm to the `menu`-script in the `algorithm`-folder
|
|
||||||
6. Add your algorithm to the list above in the following format `NAME | Author`
|
|
||||||
7. Create a `HowToUse`-file in your main folder
|
|
||||||
**Only if your algorithm works:**
|
|
||||||
8. Create a pull request to merge the data
|
|
||||||
|
|
||||||
**Pay attention: NEVER commit test data, passwords or personal information!**
|
|
||||||
|
|
||||||
Have fun... :)
|
|
||||||
|
|
||||||
~
|
~
|
||||||
|
|||||||
@@ -1,40 +1,19 @@
|
|||||||
# Calculate the difference between two points giving the indexes of these data entries
|
# Imports for dmlib
|
||||||
|
import math
|
||||||
|
|
||||||
|
|
||||||
|
# Calculate the difference between two points giving the indexes of these xdata entries
|
||||||
def calcdiff(point1, point2):
|
def calcdiff(point1, point2):
|
||||||
if int(point2) > int(point1):
|
if int(point2) > int(point1):
|
||||||
difference = int(point2) - int(point1)
|
difference = int(point2) - int(point1)
|
||||||
else:
|
else:
|
||||||
difference = int(point1) - int(point2)
|
difference = int(point1) - int(point2)
|
||||||
# print("Datapoint: " + str(data[point1]) + " | Cluster: " + str(data[point2]) + " | Difference: " + str(difference))
|
return difference
|
||||||
return betrag(difference)
|
|
||||||
|
|
||||||
# Get the absolute value of a number and returns it as int
|
|
||||||
def betrag(number):
|
|
||||||
if number < 0:
|
|
||||||
number = int((-2 * number) / 2)
|
|
||||||
return number
|
|
||||||
|
|
||||||
# Determine the highest int value in an array and returns is as an int
|
# Calculate the difference between two points in 2D space
|
||||||
def findHighest(data):
|
def calcdiff2d(point1, point2):
|
||||||
maximum = 0
|
point1 = [int(i) for i in point1]
|
||||||
for i in range(0, len(data)):
|
point2 = [int(i) for i in point2]
|
||||||
if int(data[i]) > maximum:
|
difference = math.sqrt(((point2[0]) - (point1[0])) ** 2 + ((point2[1]) - (point1[1])) ** 2)
|
||||||
maximum = int(data[i])
|
return abs(difference)
|
||||||
return maximum
|
|
||||||
|
|
||||||
def pp_calcdiff(data, clusterpoint):
|
|
||||||
max_diff = 0
|
|
||||||
new_cluster = 0
|
|
||||||
for item in range(0,len(data)):
|
|
||||||
if calcdiff(data[item], clusterpoint) > max_diff:
|
|
||||||
max_diff = calcdiff(data[item], clusterpoint)
|
|
||||||
new_cluster = data[item]
|
|
||||||
return new_cluster
|
|
||||||
|
|
||||||
def pp_calcdiff_2(data, clusterpoint, clusterpoint_2):
|
|
||||||
max_diff = 0
|
|
||||||
new_cluster = 0
|
|
||||||
for item in range(0,len(data)):
|
|
||||||
if calcdiff(data[item], clusterpoint) + calcdiff(data[item], clusterpoint_2) > max_diff:
|
|
||||||
max_diff = calcdiff(data[item], clusterpoint)
|
|
||||||
new_cluster = data[item]
|
|
||||||
return new_cluster
|
|
||||||
|
|||||||
@@ -1,34 +1,64 @@
|
|||||||
# For random generation of numbers import randint
|
# For random generation of numbers import randint
|
||||||
from random import randint, shuffle
|
from random import randint, shuffle
|
||||||
|
|
||||||
# Simple generator for test plzs (40-40-20 biased), returns 1D array of plzs
|
|
||||||
def plzGen(entries):
|
# Simple generator for test nums (40-40-20 biased), returns 1D array of nums
|
||||||
dataArray = []
|
def numGenLight(entries, shuffle, num_lenght):
|
||||||
plz_lenght = 5
|
dataArray = []
|
||||||
for i in range(0, int(entries)):
|
for i in range(0, int(entries)):
|
||||||
if i < round(entries * 0.4):
|
if i < round(entries * 0.4):
|
||||||
plz = generateNumber(plz_lenght, 2)
|
num = generateNumber(num_lenght, 2)
|
||||||
elif i >= round(entries * 0.4) and i < round(entries * 0.6):
|
elif i >= round(entries * 0.4) and i < round(entries * 0.6):
|
||||||
plz = generateNumber(plz_lenght, 9)
|
num = generateNumber(num_lenght, 9)
|
||||||
elif i >= round(entries * 0.6) and i < round(entries * 0.9):
|
elif i >= round(entries * 0.6) and i < round(entries * 0.9):
|
||||||
plz = generateNumber(plz_lenght, 4)
|
num = generateNumber(num_lenght, 4)
|
||||||
else:
|
else:
|
||||||
plz = generateNumber(plz_lenght, randint(0,9))
|
num = generateNumber(num_lenght, randint(0, 9))
|
||||||
dataArray.append(plz)
|
dataArray.append(num)
|
||||||
shuffle(dataArray)
|
if shuffle:
|
||||||
return dataArray
|
shuffle(dataArray)
|
||||||
|
return dataArray
|
||||||
|
|
||||||
|
|
||||||
# Function for generating the content of one single row randomly
|
# Function for generating the content of one single row randomly
|
||||||
def generateNumber(numberLenght, startingNumber):
|
def generateNumber(numberLenght, startingNumber):
|
||||||
number = str(startingNumber)
|
number = str(startingNumber)
|
||||||
for length in range(0, numberLenght - 1):
|
for length in range(0, numberLenght - 1):
|
||||||
number = number + str(randint(0,9))
|
number = number + str(randint(0, 9))
|
||||||
return number
|
return number
|
||||||
|
|
||||||
# Function for writing data into a file (content = string, nameChunkStart and namePartStart are for better naming)
|
|
||||||
|
# Function for writing data into a file
|
||||||
|
# content = string, nameChunkStart and namePartStart are for better naming
|
||||||
# /testdata/ folder has to be created at this point
|
# /testdata/ folder has to be created at this point
|
||||||
def writeFile(content, nameChunkStart, namePartStart):
|
def writeFile(content, nameChunkStart, namePartStart):
|
||||||
filenumber = int(nameChunkStart) + int(namePartStart)
|
filenumber = int(nameChunkStart) + int(namePartStart)
|
||||||
file = open("testdata/file" + str(filenumber) + ".txt", "w")
|
file = open("testdata/file" + str(filenumber) + ".txt", "w")
|
||||||
for w in range(0, len(content)):
|
for w in range(0, len(content)):
|
||||||
file.write(content[w] + "\n")
|
file.write(content[w] + "\n")
|
||||||
|
|
||||||
|
|
||||||
|
# Function for generating 'entries'x int_lenght'-long numbers in 'clusters' clusters
|
||||||
|
def numGen(entries, cluster, int_lenght, suffle_value):
|
||||||
|
dataArray = []
|
||||||
|
clusterArray = []
|
||||||
|
|
||||||
|
for cluster_num in range(0, cluster):
|
||||||
|
clusterArray.append(randint(10, 99))
|
||||||
|
|
||||||
|
for item in range(0, entries):
|
||||||
|
decider = randint(0, 2)
|
||||||
|
if decider == 2:
|
||||||
|
dataArray.append(generateNumber(int_lenght, randint(1, 9)))
|
||||||
|
else:
|
||||||
|
cluster_decider = randint(0, cluster - 1)
|
||||||
|
dataArray.append(
|
||||||
|
generateNumber(
|
||||||
|
int_lenght - 1,
|
||||||
|
clusterArray[cluster_decider]
|
||||||
|
))
|
||||||
|
|
||||||
|
if suffle_value:
|
||||||
|
shuffle(dataArray)
|
||||||
|
|
||||||
|
return dataArray
|
||||||
|
|||||||
143
src/algorithms/k-means/kmeansMkI.py
Normal file
143
src/algorithms/k-means/kmeansMkI.py
Normal file
@@ -0,0 +1,143 @@
|
|||||||
|
#!/usr/bin/env python
|
||||||
|
# title: kmeansMkI.py
|
||||||
|
# description: Our personal Python K-Means++ implementation
|
||||||
|
# author: Tillmann Brendel, Conrad Großer
|
||||||
|
# license: Pending
|
||||||
|
# date: 26.05.2018
|
||||||
|
# version: 1.3
|
||||||
|
# usage: python pyscript.py
|
||||||
|
# notes:
|
||||||
|
# dependencies: matplotlib
|
||||||
|
# known_issues: When clusters are 'thin' or noice is to strong --> inaccurate
|
||||||
|
# python_version: 3.x
|
||||||
|
# ==============================================================================
|
||||||
|
|
||||||
|
# IMPORTS
|
||||||
|
|
||||||
|
# Importing the time for benchmarking purposes
|
||||||
|
import time
|
||||||
|
|
||||||
|
# For random generation of numbers import randint
|
||||||
|
from random import randint
|
||||||
|
|
||||||
|
# Importing libaries for easy plotting
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
|
||||||
|
# Importing own libaries Datamining Libary and Datamining Test
|
||||||
|
import dmlib
|
||||||
|
import dmtest
|
||||||
|
|
||||||
|
|
||||||
|
# CODE
|
||||||
|
# Main function of the algorithm
|
||||||
|
def kmeansmk1(data, clusters):
|
||||||
|
# Defining cluster points
|
||||||
|
for i in range(0, clusters):
|
||||||
|
globals()["cpoint_" + str(i)] = data[randint(0, len(data))]
|
||||||
|
print("Initial cluster " + str(i + 1) + ": " + str(globals()["cpoint_" + str(i)]))
|
||||||
|
|
||||||
|
# Get max value in the data array
|
||||||
|
highPoint = max(data)
|
||||||
|
|
||||||
|
# Define variables for running the algorithm (runs is just for benchmarking!)
|
||||||
|
done = False
|
||||||
|
runs = 0
|
||||||
|
|
||||||
|
# As long as calcClusters returns done it will rearange the clusters and assign the data to the clusters
|
||||||
|
while not done:
|
||||||
|
runs += 1
|
||||||
|
new_data = assignCluster(data, highPoint, clusters)
|
||||||
|
done = calcClusters(new_data, clusters)
|
||||||
|
|
||||||
|
# Printing final clusters
|
||||||
|
for i in range(0, clusters):
|
||||||
|
print("Endcluster " + str(i + 1) + " is calculated to be at " + str(globals()["cpoint_" + str(i)]) + " after " + str(runs) + " runs")
|
||||||
|
|
||||||
|
# Getting artificial array for visualizing 1D data in an 2D graphic of the size of the original data
|
||||||
|
anew = []
|
||||||
|
inew = 0
|
||||||
|
while inew < len(data):
|
||||||
|
anew.append(inew)
|
||||||
|
inew = inew + 1
|
||||||
|
|
||||||
|
# Drawing found clusters as lines
|
||||||
|
for i in range(0, clusters):
|
||||||
|
plt.axvline(x=int(globals()["cpoint_" + str(i)]), color='r')
|
||||||
|
|
||||||
|
# Showing graph
|
||||||
|
plt.scatter([int(x) for x in data], anew, marker='x', s=7, color='k')
|
||||||
|
plt.show()
|
||||||
|
|
||||||
|
return 0
|
||||||
|
|
||||||
|
|
||||||
|
# Calculates middle values for each cluster, takes 2D array (item, assigned_cluster)
|
||||||
|
def calcClusters(data, clusters):
|
||||||
|
changed = False
|
||||||
|
for cluster in range(0, clusters):
|
||||||
|
# Getting current cluster and saving it in temporary variable
|
||||||
|
prev_cluster = globals()["cpoint_" + str(cluster)]
|
||||||
|
# Sum of the cluster to calculate average difference between cluster center and data points
|
||||||
|
clustersum = 0
|
||||||
|
item_count = 0
|
||||||
|
|
||||||
|
for item in range(0, len(data[0])):
|
||||||
|
if data[1][item] == globals()["cpoint_" + str(cluster)]:
|
||||||
|
clustersum = clustersum + int(data[0][item])
|
||||||
|
item_count = item_count + 1
|
||||||
|
globals()["cpoint_" + str(cluster)] = round(clustersum / item_count)
|
||||||
|
|
||||||
|
# Checking if previous clusterpoint is equal to the one just calculated
|
||||||
|
if prev_cluster == globals()["cpoint_" + str(cluster)]:
|
||||||
|
changed = True
|
||||||
|
|
||||||
|
return changed
|
||||||
|
|
||||||
|
|
||||||
|
def assignCluster(data, highPoint, clusters):
|
||||||
|
# Create a new data array for working
|
||||||
|
new_data = []
|
||||||
|
new_data.append(data)
|
||||||
|
|
||||||
|
# Create new array for assigned clusters of each value
|
||||||
|
data_assigned = []
|
||||||
|
|
||||||
|
# For each item in data find the minimal difference to a cluster and write it in the new data array in the second place (new_data[item][cluster_index])
|
||||||
|
for item in range(0, len(new_data[0])):
|
||||||
|
# Set the minimal cluster difference to the highest difference in the list to ease comparision
|
||||||
|
min_cluster = highPoint
|
||||||
|
|
||||||
|
# Check the difference between the point (item) and each cluster and set min_cluster to the smallest difference
|
||||||
|
for cluster in range(0, clusters):
|
||||||
|
if min_cluster > dmlib.calcdiff(data[item], globals()["cpoint_" + str(cluster)]):
|
||||||
|
min_cluster = dmlib.calcdiff(data[item], globals()["cpoint_" + str(cluster)])
|
||||||
|
assinged_cluster = globals()["cpoint_" + str(cluster)]
|
||||||
|
# Assign the minimal difference cluster to the data
|
||||||
|
data_assigned.append(assinged_cluster)
|
||||||
|
# Add the assigned values list to the new_data array
|
||||||
|
new_data.append(data_assigned)
|
||||||
|
|
||||||
|
return new_data
|
||||||
|
|
||||||
|
|
||||||
|
# Startup function for collecting necesarry data
|
||||||
|
def startup(data):
|
||||||
|
# Using two clusters for testing
|
||||||
|
clusters = int(input("How many clusters are known? "))
|
||||||
|
# cores = input("How many cores should be used? ")
|
||||||
|
# path = input("Where is the data? ") or in this case data
|
||||||
|
|
||||||
|
# For benchmarking starting the timer now
|
||||||
|
start_time = time.time()
|
||||||
|
|
||||||
|
# Firing up the engines!
|
||||||
|
kmeansmk1(data, clusters)
|
||||||
|
|
||||||
|
# Stopping benchmark
|
||||||
|
seconds = time.time() - start_time
|
||||||
|
print(str(seconds) + " seconds for execution")
|
||||||
|
|
||||||
|
|
||||||
|
# Start the algorithm and generate test data
|
||||||
|
data = dmtest.numGen(10000, 10, 5, True)
|
||||||
|
startup(data)
|
||||||
126
src/algorithms/k-means/kmeansMkI_2d.py
Normal file
126
src/algorithms/k-means/kmeansMkI_2d.py
Normal file
@@ -0,0 +1,126 @@
|
|||||||
|
#!/usr/bin/env python
|
||||||
|
# title: kmeansMkI.py
|
||||||
|
# description: Our personal Python K-Means++ implementation
|
||||||
|
# author: Tillmann Brendel, Conrad Großer
|
||||||
|
# license: Pending
|
||||||
|
# date: 04.06.2018
|
||||||
|
# version: 1.6
|
||||||
|
# usage: python pyscript.py
|
||||||
|
# notes:
|
||||||
|
# known_issues:
|
||||||
|
# python_version: 3.x
|
||||||
|
# ==============================================================================
|
||||||
|
|
||||||
|
# IMPORTS
|
||||||
|
|
||||||
|
# Importing the time for benchmarking purposes
|
||||||
|
import time
|
||||||
|
|
||||||
|
# For random generation of numbers import randint
|
||||||
|
from random import randint
|
||||||
|
|
||||||
|
# Importing libaries for easy plotting
|
||||||
|
import matplotlib.pyplot as plt
|
||||||
|
|
||||||
|
# Importing own libaries Datamining Libary and Datamining Test
|
||||||
|
import dmlib
|
||||||
|
import dmtest
|
||||||
|
|
||||||
|
|
||||||
|
# Main function of the algorithm
|
||||||
|
def kmeansmk1(xdata, ydata, clusters):
|
||||||
|
# Defining cluster points
|
||||||
|
for i in range(0, clusters):
|
||||||
|
globals()["cpoint_" + str(i)] = [xdata[randint(0, len(xdata))], ydata[randint(0, len(ydata))]]
|
||||||
|
print("Initial cluster " + str(i + 1) + ": " + str(globals()["cpoint_" + str(i)]))
|
||||||
|
|
||||||
|
# Get the maximum of the data
|
||||||
|
highpointx = max(xdata)
|
||||||
|
highpointy = max(ydata)
|
||||||
|
|
||||||
|
# Define variables for running the algorithm (runs is just as important as every other variable)
|
||||||
|
done = False
|
||||||
|
runs = 0
|
||||||
|
|
||||||
|
# As long as calcClusters returns False it will rearrange the clusters and assign the data to the clusters
|
||||||
|
while not done:
|
||||||
|
runs += 1
|
||||||
|
assigned_points = assignCluster(xdata, ydata, clusters, highpointx, highpointy)
|
||||||
|
# assigned_points consists of the clusternumbers
|
||||||
|
done = calcClusters(xdata, ydata, assigned_points, clusters)
|
||||||
|
|
||||||
|
for i in range(0, clusters):
|
||||||
|
print("Endcluster " + str(i + 1) + " is calculated to be at " + str(globals()["cpoint_" + str(i)]) + " after " + str(runs) + " runs")
|
||||||
|
for i in range(0, clusters):
|
||||||
|
plt.plot(globals()["cpoint_" + str(i)][0], globals()["cpoint_" + str(i)][1], 'ro')
|
||||||
|
|
||||||
|
plt.scatter([int(x) for x in xdata], [int(y) for y in ydata], marker='x', s=7, color='k')
|
||||||
|
plt.show()
|
||||||
|
|
||||||
|
|
||||||
|
# Calculates middle values for each cluster, takes 2D array (item, assigned_cluster)
|
||||||
|
def calcClusters(xdata, ydata, assigned_points, clusters):
|
||||||
|
for cluster in range(0, clusters):
|
||||||
|
cpointunchanged = True
|
||||||
|
globals()["oldcpoint_" + str(cluster)] = globals()["cpoint_" + str(cluster)]
|
||||||
|
clustersumx = 0
|
||||||
|
clustersumy = 0
|
||||||
|
count = 0
|
||||||
|
|
||||||
|
for item in range(0, len(xdata)):
|
||||||
|
if assigned_points[item] == cluster:
|
||||||
|
clustersumx = clustersumx + int(xdata[item])
|
||||||
|
clustersumy = clustersumy + int(ydata[item])
|
||||||
|
count = count + 1
|
||||||
|
|
||||||
|
globals()["cpoint_" + str(cluster)] = [round(clustersumx / count), round(clustersumy / count)]
|
||||||
|
|
||||||
|
# checking if old clusterpoint is equal to the one just calculated
|
||||||
|
if globals()["oldcpoint_" + str(cluster)] != globals()["cpoint_" + str(cluster)]:
|
||||||
|
cpointunchanged = False
|
||||||
|
|
||||||
|
return cpointunchanged
|
||||||
|
|
||||||
|
|
||||||
|
def assignCluster(xdata, ydata, clusters, highpointx, highpointy):
|
||||||
|
data_assigned = []
|
||||||
|
assigned_cluster = 0
|
||||||
|
resetdist = dmlib.calcdiff2d([0, 0], [highpointx, highpointy])
|
||||||
|
|
||||||
|
for item in range(0, len(xdata)):
|
||||||
|
olddistance = resetdist
|
||||||
|
for cluster in range(0, clusters):
|
||||||
|
distance = dmlib.calcdiff2d(globals()["cpoint_" + str(cluster)], [xdata[item], ydata[item]])
|
||||||
|
|
||||||
|
if distance < olddistance:
|
||||||
|
olddistance = distance
|
||||||
|
assigned_cluster = cluster
|
||||||
|
|
||||||
|
data_assigned.append(assigned_cluster)
|
||||||
|
|
||||||
|
return data_assigned
|
||||||
|
|
||||||
|
|
||||||
|
# Startup function for collecting necesarry xdata
|
||||||
|
def startup(xdata, ydata):
|
||||||
|
# Using two clusters for testing
|
||||||
|
clusters = int(input("How many clusters are known? "))
|
||||||
|
# cores = input("How many cores should be used? ")
|
||||||
|
# path = input("Where is the xdata? ") or in this case xdata
|
||||||
|
|
||||||
|
# For benchmarking starting the timer now
|
||||||
|
start_time = time.time()
|
||||||
|
|
||||||
|
# Firing up the engines!
|
||||||
|
kmeansmk1(xdata, ydata, clusters)
|
||||||
|
|
||||||
|
# Stopping benchmark
|
||||||
|
seconds = time.time() - start_time
|
||||||
|
print(str(seconds) + " seconds for execution")
|
||||||
|
|
||||||
|
|
||||||
|
# Start the algorithm and generate test xdata
|
||||||
|
xdata = dmtest.numGenLight(10000, False, 5)
|
||||||
|
ydata = dmtest.numGenLight(10000, False, 2)
|
||||||
|
|
||||||
|
startup(xdata, ydata)
|
||||||
@@ -1,140 +0,0 @@
|
|||||||
#!/usr/bin/env python
|
|
||||||
#title: kmeansMkI.py
|
|
||||||
#description: Our personal Python K-Means++ implementation
|
|
||||||
#author: Tillmann Brendel, Conrad Großer
|
|
||||||
#license: Pending
|
|
||||||
#date: 26.05.2018
|
|
||||||
#version: 1.2
|
|
||||||
#usage: python pyscript.py
|
|
||||||
#notes:
|
|
||||||
#dependencies: mathplotlib
|
|
||||||
#known_issues:
|
|
||||||
#python_version: 3.x
|
|
||||||
#==============================================================================
|
|
||||||
|
|
||||||
# IMPORTS
|
|
||||||
|
|
||||||
# Importing the time for benchmarking purposes
|
|
||||||
import time
|
|
||||||
from datetime import date
|
|
||||||
|
|
||||||
# For random generation of numbers import randint
|
|
||||||
from random import randint
|
|
||||||
|
|
||||||
# Importing libaries for easy plotting
|
|
||||||
import matplotlib.pyplot as plt
|
|
||||||
|
|
||||||
# Importing own libaries Datamining Libary and Datamining Test
|
|
||||||
import dmlib
|
|
||||||
import dmtest
|
|
||||||
|
|
||||||
# CODE
|
|
||||||
# Main function of the algorithm
|
|
||||||
def kmeansmk1(data, clusters):
|
|
||||||
# Defining cluster points
|
|
||||||
for i in range(0, clusters):
|
|
||||||
globals()["cpoint_" + str(i)] = data[randint(0, len(data))]
|
|
||||||
print("Initial cluster " + str(i + 1) + ": " + str(globals()["cpoint_" + str(i)]))
|
|
||||||
|
|
||||||
# Get max value in the data array
|
|
||||||
highPoint = dmlib.findHighest(data)
|
|
||||||
|
|
||||||
# Define variables for running the algorithm (runs is just for benchmarking!)
|
|
||||||
done = 0
|
|
||||||
runs = 0
|
|
||||||
|
|
||||||
# As long as calcClusters returns done it will rearange the clusters and assign the data to the clusters
|
|
||||||
while done == 0:
|
|
||||||
runs = runs + 1
|
|
||||||
new_data = assignCluster(data, highPoint, clusters)
|
|
||||||
done = calcClusters(new_data, clusters)
|
|
||||||
|
|
||||||
# Printing final clusters
|
|
||||||
for i in range(0, clusters):
|
|
||||||
print("Endcluster " + str(i + 1) + " is calculated to be at " + str(globals()["cpoint_" + str(i)]) + " after " + str(runs) + " runs")
|
|
||||||
|
|
||||||
# Getting artificial array for visualizing 1D data in an 2D graphic of the size of the original data
|
|
||||||
anew = []
|
|
||||||
inew = 0
|
|
||||||
while inew < len(data):
|
|
||||||
anew.append(inew)
|
|
||||||
inew = inew + 1
|
|
||||||
|
|
||||||
# Drawing found clusters as lines
|
|
||||||
for i in range(0, clusters):
|
|
||||||
plt.axvline(x=int(globals()["cpoint_" + str(i)]), color='r')
|
|
||||||
|
|
||||||
# Showing graph
|
|
||||||
plt.scatter([int(x) for x in data], anew, marker='x', s=7, color='k')
|
|
||||||
plt.show()
|
|
||||||
|
|
||||||
return 0
|
|
||||||
|
|
||||||
# Calculates middle values for each cluster, takes 2D array (item, assigned_cluster)
|
|
||||||
def calcClusters(data, clusters):
|
|
||||||
changed = 0
|
|
||||||
for cluster in range(0, clusters):
|
|
||||||
# Getting current cluster and saving it in temporary variable
|
|
||||||
prev_cluster = globals()["cpoint_" + str(cluster)]
|
|
||||||
# Sum of the cluster to calculate average difference between cluster center and data points
|
|
||||||
clustersum = 0
|
|
||||||
item_count = 0
|
|
||||||
|
|
||||||
for item in range(0, len(data[0])):
|
|
||||||
if data[1][item] == globals()["cpoint_" + str(cluster)]:
|
|
||||||
clustersum = clustersum + int(data[0][item])
|
|
||||||
item_count = item_count + 1
|
|
||||||
globals()["cpoint_" + str(cluster)] = round(clustersum / item_count)
|
|
||||||
|
|
||||||
# Checking if previous clusterpoint is equal to the one just calculated
|
|
||||||
if prev_cluster == globals()["cpoint_" + str(cluster)]:
|
|
||||||
changed = 1
|
|
||||||
|
|
||||||
return changed
|
|
||||||
|
|
||||||
def assignCluster(data, highPoint, clusters):
|
|
||||||
# Create a new data array for working
|
|
||||||
new_data = []
|
|
||||||
new_data.append(data)
|
|
||||||
|
|
||||||
# Create new array for assigned clusters of each value
|
|
||||||
data_assigned = []
|
|
||||||
|
|
||||||
# For each item in data find the minimal difference to a cluster and write it in the new data array in the second place (new_data[item][cluster_index])
|
|
||||||
for item in range(0, len(new_data[0])):
|
|
||||||
# Set the minimal cluster difference to the highest difference in the list to ease comparision
|
|
||||||
min_cluster = highPoint
|
|
||||||
|
|
||||||
# Check the difference between the point (item) and each cluster and set min_cluster to the smallest difference
|
|
||||||
for cluster in range(0, clusters):
|
|
||||||
if min_cluster > dmlib.calcdiff(data[item], globals()["cpoint_" + str(cluster)]):
|
|
||||||
min_cluster = dmlib.calcdiff(data[item], globals()["cpoint_" + str(cluster)])
|
|
||||||
assinged_cluster = globals()["cpoint_" + str(cluster)]
|
|
||||||
# Assign the minimal difference cluster to the data
|
|
||||||
data_assigned.append(assinged_cluster)
|
|
||||||
# Add the assigned values list to the new_data array
|
|
||||||
new_data.append(data_assigned)
|
|
||||||
|
|
||||||
return new_data
|
|
||||||
|
|
||||||
# Startup function for collecting necesarry data
|
|
||||||
def startup(data):
|
|
||||||
# Using two clusters for testing
|
|
||||||
clusters = int(input("How many clusters are known? "))
|
|
||||||
# cores = input("How many cores should be used? ")
|
|
||||||
# path = input("Where is the data? ") or in this case data
|
|
||||||
|
|
||||||
# For benchmarking starting the timer now
|
|
||||||
start_time = time.time()
|
|
||||||
|
|
||||||
# Firing up the engines!
|
|
||||||
kmeansmk1(data, clusters)
|
|
||||||
|
|
||||||
# Stopping benchmark
|
|
||||||
seconds = time.time() - start_time
|
|
||||||
print(str(seconds) + " seconds for execution")
|
|
||||||
|
|
||||||
# Start the algorithm and generate test data
|
|
||||||
data = dmtest.plzGen(10000)
|
|
||||||
|
|
||||||
startup(data)
|
|
||||||
@@ -11,68 +11,77 @@ from datetime import date
|
|||||||
import multiprocessing
|
import multiprocessing
|
||||||
|
|
||||||
# randomI function which creates each file
|
# randomI function which creates each file
|
||||||
|
|
||||||
|
|
||||||
def randomI(units, rows, rowLength, partstart):
|
def randomI(units, rows, rowLength, partstart):
|
||||||
for setcounter in range(0, units):
|
for setcounter in range(0, units):
|
||||||
writeFile(generateFile(rows, rowLength), setcounter, partstart)
|
writeFile(generateFile(rows, rowLength), setcounter, partstart)
|
||||||
|
|
||||||
# Function for generating the content of one single file
|
# Function for generating the content of one single file
|
||||||
|
|
||||||
|
|
||||||
def generateFile(rows, rowLength):
|
def generateFile(rows, rowLength):
|
||||||
content = []
|
content = []
|
||||||
for y in range(0, rows):
|
for y in range(0, rows):
|
||||||
content.append(generateRow(rowLength))
|
content.append(generateRow(rowLength))
|
||||||
return content
|
return content
|
||||||
|
|
||||||
# Function for generating the content of one single row randomly
|
# Function for generating the content of one single row randomly
|
||||||
|
|
||||||
|
|
||||||
def generateRow(rowLength):
|
def generateRow(rowLength):
|
||||||
row = ""
|
row = ""
|
||||||
for z in range(0, rowLength):
|
for z in range(0, rowLength):
|
||||||
row = row + str(randint(0, 9))
|
row = row + str(randint(0, 9))
|
||||||
return row
|
return row
|
||||||
|
|
||||||
# Function for writing data into a file
|
# Function for writing data into a file
|
||||||
|
|
||||||
|
|
||||||
def writeFile(content, setcounter, partstart):
|
def writeFile(content, setcounter, partstart):
|
||||||
filenumber = int(setcounter) + int(partstart)
|
filenumber = int(setcounter) + int(partstart)
|
||||||
file = open("testdata/file" + str(filenumber) + ".txt", "w")
|
file = open("testdata/file" + str(filenumber) + ".txt", "w")
|
||||||
for w in range(0, len(content)):
|
for w in range(0, len(content)):
|
||||||
file.write(content[w] + "\n")
|
file.write(content[w] + "\n")
|
||||||
|
|
||||||
|
|
||||||
if __name__ == '__main__':
|
if __name__ == '__main__':
|
||||||
# Getting the user input
|
# Getting the user input
|
||||||
print("Hello World")
|
print("Hello World")
|
||||||
units = int(input("How many units would you like to generate? "))
|
units = int(input("How many units would you like to generate? "))
|
||||||
rows = int(input("How many rows should each unit have? "))
|
rows = int(input("How many rows should each unit have? "))
|
||||||
rowLength = int(input("How long should each row be? "))
|
rowLength = int(input("How long should each row be? "))
|
||||||
cores = int(input("How many cores do you want to use? "))
|
cores = int(input("How many cores do you want to use? "))
|
||||||
|
|
||||||
# Splitting up the units
|
# Splitting up the units
|
||||||
count = int(0)
|
count = int(0)
|
||||||
partsize = units / cores
|
partsize = units / cores
|
||||||
|
|
||||||
# For benchmarking starting the timer now
|
# For benchmarking starting the timer now
|
||||||
start_time = time.time()
|
start_time = time.time()
|
||||||
|
|
||||||
# Initialize and prepare cores for process
|
# Initialize and prepare cores for process
|
||||||
while count < cores:
|
while count < cores:
|
||||||
partstart = partsize * count
|
partstart = partsize * count
|
||||||
globals()["p" + str(count)] = multiprocessing.Process(target=randomI, args=(int(partsize), rows, rowLength, partstart))
|
globals()["p" + str(count)] = multiprocessing.Process(target=randomI, args=(int(partsize), rows, rowLength, partstart))
|
||||||
count = count + 1
|
count = count + 1
|
||||||
|
|
||||||
# Starting each core
|
# Starting each core
|
||||||
count = int(0)
|
count = int(0)
|
||||||
while count < cores:
|
while count < cores:
|
||||||
globals()["p" + str(count)].start()
|
globals()["p" + str(count)].start()
|
||||||
print("Core " + str(count) + " started.")
|
print("Core " + str(count) + " started.")
|
||||||
count = count + 1
|
count = count + 1
|
||||||
|
|
||||||
print("Working...")
|
print("Working...")
|
||||||
|
|
||||||
# Joining each core for the process
|
# Joining each core for the process
|
||||||
count = int(0)
|
count = int(0)
|
||||||
while count < cores:
|
while count < cores:
|
||||||
globals()["p" + str(count)].join()
|
globals()["p" + str(count)].join()
|
||||||
count = count + 1
|
count = count + 1
|
||||||
|
|
||||||
# Finishing up the process
|
# Finishing up the process
|
||||||
sec = time.time() - start_time
|
sec = time.time() - start_time
|
||||||
print("Data is generated. Have fun!")
|
print("Data is generated. Have fun!")
|
||||||
print("randomI took " + str(sec) + " seconds for execution.")
|
print("randomI took " + str(sec) + " seconds for execution.")
|
||||||
|
|||||||
@@ -1,96 +0,0 @@
|
|||||||
#!/usr/bin/env python
|
|
||||||
#title: randomI2.1.py
|
|
||||||
#description: Personal
|
|
||||||
#author: Tillmann Brendel, Conrad Großer
|
|
||||||
#license: Pending
|
|
||||||
#date: 26.05.2018
|
|
||||||
#version: 1.0
|
|
||||||
#usage: python pyscript.py
|
|
||||||
#notes:
|
|
||||||
#known_issues:
|
|
||||||
#python_version: 3.x
|
|
||||||
#==============================================================================
|
|
||||||
|
|
||||||
# For random generation of numbers import randint
|
|
||||||
from random import randint
|
|
||||||
|
|
||||||
# Importing the time for benchmarking purposes
|
|
||||||
import time
|
|
||||||
from datetime import date
|
|
||||||
|
|
||||||
# Importing for multi core processing
|
|
||||||
import multiprocessing
|
|
||||||
|
|
||||||
# randomI function which creates each file
|
|
||||||
def randomI(units, rows, rowLength, partstart, cluster):
|
|
||||||
for setcounter in range(0, units):
|
|
||||||
writeFile(generateFile(rows, rowLength, cluster), setcounter, partstart)
|
|
||||||
|
|
||||||
# Function for generating the content of one single file
|
|
||||||
def generateFile(rows, rowLength, cluster):
|
|
||||||
content = []
|
|
||||||
for y in range(0, rows):
|
|
||||||
if y == 0:
|
|
||||||
if 1 == randint(1, cluster):
|
|
||||||
content.append(generate09())
|
|
||||||
else:
|
|
||||||
content.append(generatePLZ())
|
|
||||||
else:
|
|
||||||
content.append(generateRow(rowLength))
|
|
||||||
return content
|
|
||||||
|
|
||||||
# Function for generating the content of one single row randomly
|
|
||||||
def generateRow(rowLength):
|
|
||||||
row = ""
|
|
||||||
for z in range(0, rowLength):
|
|
||||||
row = row + str(randint(0, 9))
|
|
||||||
return row
|
|
||||||
|
|
||||||
# Function for writing data into a file (content = string, setcount and partstart are for better naming)
|
|
||||||
def writeFile(content, setcounter, partstart):
|
|
||||||
filenumber = int(setcounter) + int(partstart)
|
|
||||||
file = open("testdata/file" + str(filenumber) + ".txt", "w")
|
|
||||||
for w in range(0, len(content)):
|
|
||||||
file.write(content[w] + "\n")
|
|
||||||
|
|
||||||
if __name__ == '__main__':
|
|
||||||
# Getting the user input
|
|
||||||
print("Hello World")
|
|
||||||
units = int(input("How many units would you like to generate? "))
|
|
||||||
rows = int(input("How many rows should each unit have? "))
|
|
||||||
rowLength = int(input("How long should each row be? "))
|
|
||||||
cores = int(input("How many cores do you want to use? "))
|
|
||||||
cluster = int(input("What fraction of postal codes should be in the 09xxx cluster? 1/"))
|
|
||||||
|
|
||||||
# Splitting up the units
|
|
||||||
count = int(0)
|
|
||||||
partsize = units / cores
|
|
||||||
|
|
||||||
# For benchmarking starting the timer now
|
|
||||||
start_time = time.time()
|
|
||||||
|
|
||||||
# Initialize and prepare cores for process
|
|
||||||
while count < cores:
|
|
||||||
partstart = partsize * count
|
|
||||||
globals()["p" + str(count)] = multiprocessing.Process(target=randomI, args=(int(partsize), rows, rowLength, partstart, cluster))
|
|
||||||
count = count + 1
|
|
||||||
|
|
||||||
# Starting each core
|
|
||||||
count = int(0)
|
|
||||||
while count < cores:
|
|
||||||
globals()["p" + str(count)].start()
|
|
||||||
print("Core " + str(count) + " started.")
|
|
||||||
count = count + 1
|
|
||||||
|
|
||||||
print("Working...")
|
|
||||||
|
|
||||||
# Joining each core for the process
|
|
||||||
count = int(0)
|
|
||||||
while count < cores:
|
|
||||||
globals()["p" + str(count)].join()
|
|
||||||
count = count + 1
|
|
||||||
|
|
||||||
# Finishing up the process
|
|
||||||
sec = time.time() - start_time
|
|
||||||
print("Data is generated. Have fun!")
|
|
||||||
print("randomI took " + str(sec) + " seconds for execution.")
|
|
||||||
39
src/main.py
39
src/main.py
@@ -1,36 +1,35 @@
|
|||||||
#!/usr/bin/env python
|
#!/usr/bin/env python
|
||||||
#title: main.py
|
# title: main.py
|
||||||
#description:
|
# description:
|
||||||
#author: Conrad Großer
|
# author: Conrad Großer
|
||||||
#license: https://github.com/tchemn/miner/blob/master/LICENSE
|
# license: https://github.com/tchemn/miner/blob/master/LICENSE
|
||||||
#date: 02.06.2018
|
# date: 02.06.2018
|
||||||
#version: 0.1
|
# version: 0.1
|
||||||
#usage: PENDING
|
# usage: PENDING
|
||||||
#notes:
|
# notes:
|
||||||
#dependencies:
|
# dependencies:
|
||||||
#known_issues:
|
# known_issues:
|
||||||
#python_version: 3.x
|
# python_version: 3.x
|
||||||
#==============================================================================
|
# ==============================================================================
|
||||||
|
|
||||||
# IMPORTS
|
# IMPORTS
|
||||||
|
|
||||||
# Importing the time for benchmarking purposes
|
# Importing the time for benchmarking purposes
|
||||||
import time
|
import time
|
||||||
from datetime import date
|
|
||||||
|
|
||||||
# CODE (FUNCTIONS)
|
# CODE
|
||||||
|
|
||||||
|
|
||||||
# EXECUTION
|
# EXECUTION
|
||||||
if __name__ == '__main__':
|
if __name__ == '__main__':
|
||||||
# Print welcoming message
|
# Print welcoming message
|
||||||
print("Hello world")
|
print("Hello world")
|
||||||
|
|
||||||
# For benchmarking starting the timer now
|
# For benchmarking starting the timer now
|
||||||
start_time = time.time()
|
start_time = time.time()
|
||||||
|
|
||||||
# Get parameters, call functions, execute program (...)
|
# Get parameters, call functions, execute program (...)
|
||||||
|
|
||||||
# BENCHMARKING [END]
|
# BENCHMARKING [END]
|
||||||
sec = time.time() - start_time
|
sec = time.time() - start_time
|
||||||
print("The program took " + str(sec) + " seconds (" + str(sec/60) + " minutes) for execution.")
|
print("The program took " + str(sec) + " seconds (" + str(sec/60) + " minutes) for execution.")
|
||||||
|
|||||||
@@ -3,4 +3,4 @@
|
|||||||
|
|
||||||
# Main method of the importer
|
# Main method of the importer
|
||||||
if __name__ == '__main__':
|
if __name__ == '__main__':
|
||||||
print("IMPORTER MODULE")
|
print("IMPORTER MODULE")
|
||||||
|
|||||||
@@ -1,16 +1,16 @@
|
|||||||
#!/usr/bin/env python
|
#!/usr/bin/env python
|
||||||
#title: template.py
|
# title: template.py
|
||||||
#description: Template for any programm
|
# description: Template for any programm
|
||||||
#author: Authors seperated by comma
|
# author: Authors seperated by comma
|
||||||
#license: License for the programm
|
# license: License for the programm
|
||||||
#date: Date of creation
|
# date: Date of creation
|
||||||
#version: Versionnumber
|
# version: Versionnumber
|
||||||
#usage: Description of how to use the programm quickly
|
# usage: Description of how to use the programm quickly
|
||||||
#notes: Notes for parameters, thanks (...)
|
# notes: Notes for parameters, thanks (...)
|
||||||
#dependencies: Preinstalled packages
|
# dependencies: Preinstalled packages
|
||||||
#known_issues: Known issues in this version
|
# known_issues: Known issues in this version
|
||||||
#python_version: Compatible (tested) python version
|
# python_version: Compatible (tested) python version
|
||||||
#==============================================================================
|
# ==============================================================================
|
||||||
|
|
||||||
# IMPORTS
|
# IMPORTS
|
||||||
|
|
||||||
@@ -23,14 +23,14 @@ from datetime import date
|
|||||||
|
|
||||||
# EXECUTION
|
# EXECUTION
|
||||||
if __name__ == '__main__':
|
if __name__ == '__main__':
|
||||||
# Print welcoming message
|
# Print welcoming message
|
||||||
print("Hello world")
|
print("Hello world")
|
||||||
|
|
||||||
# For benchmarking starting the timer now
|
# For benchmarking starting the timer now
|
||||||
start_time = time.time()
|
start_time = time.time()
|
||||||
|
|
||||||
# Get parameters, call functions, execute program (...)
|
# Get parameters, call functions, execute program (...)
|
||||||
|
|
||||||
# BENCHMARKING [END]
|
# BENCHMARKING [END]
|
||||||
sec = time.time() - start_time
|
sec = time.time() - start_time
|
||||||
print("The program took " + str(sec) + " seconds (" + str(sec/60) + " minutes) for execution.")
|
print("The program took " + str(sec) + " seconds (" + str(sec/60) + " minutes) for execution.")
|
||||||
|
|||||||
Reference in New Issue
Block a user